PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_43041_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family FAR1
Protein Properties Length: 152aa    MW: 17580.5 Da    PI: 8.5714
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_43041_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1751.5e-2361151189
                                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.. 72 
                                          ++Y ++A++ GFs+rk++s+ s + g ++kr+fvC++ g++ ++kk+t +++r r++ r+gC+ak+ ++ke   
  cra_locus_43041_iso_1_len_453_ver_3  61 EYYANFARKNGFSIRKERSRLSPQLG-VYKRDFVCYRAGFSPPRKKQTGEHQRDRKSVRCGCDAKMYLSKEMvd 133
                                          69********************8888.*******************************************9985 PP

                                 FAR1  73 .dgkwevtkleleHnHel 89 
                                             +w v ++++ HnHel
  cra_locus_43041_iso_1_len_453_ver_3 134 gVLQWFVVQFSNVHNHEL 151
                                          5568*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-2161151IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
XIWMRRQQCP CGDWKCLITY GEEGEDTEIP SAAIKDDSGL SGAMVSPYVG MVFKSDEYAF  60
EYYANFARKN GFSIRKERSR LSPQLGVYKR DFVCYRAGFS PPRKKQTGEH QRDRKSVRCG  120
CDAKMYLSKE MVDGVLQWFV VQFSNVHNHE LX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007026339.11e-85Far1-related sequence 10 isoform 4
SwissprotQ9LKR41e-60FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A061GHB12e-85A0A061GHB1_THECC; Far1-related sequence 10 isoform 4
STRINGVIT_00s0194g00200.t015e-79(Vitis vinifera)
STRINGPOPTR_0016s00900.13e-79(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30211740