PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_42582_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HSF
Protein Properties Length: 192aa    MW: 21443.8 Da    PI: 8.6436
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_42582_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind46.69.2e-1524650103
                                          HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
                         HSF_DNA-bind  50 faSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103
                                          f+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k+ll++i+r+k++
  cra_locus_42582_iso_1_len_575_ver_3   2 FSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLLCEIHRRKTA 46 
                                          89****************99.........**********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.7E-5243IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.4E-11243IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-11243IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.6E-13243IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
XFSSFVRQLN TYGFRKIVPD RWEFANEFFK KGEKHLLCEI HRRKTAQPQV HHHHHHALGG  60
GGPNFFPYPN RVSISPPDSD DQLLPNWCDS PPPPPLLSNS SPCGGVGNIT TINYNNNSSS  120
CSSSVTSLSE DNERLRRSNN MLMSELAHMR KLYNDIIYFV QNHVKPVAPS NSFPSSLLLP  180
SSATTPPING SS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068333.11e-83PREDICTED: heat stress transcription factor B-4
SwissprotQ9C6351e-62HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A067LCE11e-83A0A067LCE1_JATCU; Uncharacterized protein
STRINGVIT_18s0001g10380.t011e-78(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450