PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3988_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family BES1
Protein Properties Length: 701aa    MW: 78608.5 Da    PI: 5.2602
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3988_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822140.61.5e-43722121131
                               DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr.... 70 
                                          gg++r ++++E+E++k+RER+RRai+aki+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++    
  cra_locus_3988_iso_1_len_2526_ver_3  72 GGTRRCRPQEEKERTKLRERQRRAITAKILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsq 145
                                          578999***************************************************************98888 PP

                               DUF822  71 .kgskpl..eeaeaagssas...aspesslqsslkssalaspvesysaspksssfpspssldsisla 131
                                           +g++p+  +++ ++ ss s   ++++ s++++  ss  ++ v+  ++++ks+ +p +s +d  s+ 
  cra_locus_3988_iso_1_len_2526_ver_3 146 gQGTRPTgvTSTTVMTSSPShmpVQQTPSVSLRGISSGYQTTVDYNACQMKSVFIPTSSPFDASSSI 212
                                          888999987566666666664433444455578889**********************999987654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.9E-3974208IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514459.17E-181258697IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.6E-197261695IPR013781Glycoside hydrolase, catalytic domain
PfamPF013732.4E-104267685IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-67298312IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-67319337IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-67341362IPR001554Glycoside hydrolase, family 14
PRINTSPR008425.0E-5424433IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.2E-67434456IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-67507526IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-67541557IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-67558569IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-67576599IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-67616638IPR001554Glycoside hydrolase, family 14
PRINTSPR008425.0E-5667681IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008425.0E-5682696IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MATELQRFVT SEDDDEEMGM DVKEEDDEDD DEGEKNVEPP IMVGVDGGLA SANSNASFLH  60
HQSYQEQPTS QGGTRRCRPQ EEKERTKLRE RQRRAITAKI LAGLRRHGNY NLRVRADIND  120
VIAALAREAG WVVLPDGTTF PSRSQGQGTR PTGVTSTTVM TSSPSHMPVQ QTPSVSLRGI  180
SSGYQTTVDY NACQMKSVFI PTSSPFDASS SIRSQTTTLI GDGGDAQNDP LLGGSIDSID  240
NKQVIDMPLP TKLQERDFAG TPYVPVYVML PLGIINMKCE LTDPDGLVKQ LRALKSIKVD  300
GVMVDCWWGI VEAHAPQEYN WNGYKQLFQI ARELKLKLQV VMSFHECGGN IGDDVCIPLP  360
HWVAEIGRSN PDIFFTDRAG RRNPECLSWG IDKERVLRGR TAVEVYFDYM RSFRVEFDEF  420
FEDGIISLIE VGLGPCGELR YPSYPVKHGW RYPGVGEFQC YDQYLLKNLR KAAEARGHLF  480
WARGPDNAGS HNSRPHETGF FCDGGDYDGY YGRFFLNWYS QVLVDHGDRV LSLAKLAFED  540
TCIAAKLSGI PWWYKTASHA AELTAGFYNS CNRDGYAATM AMLKKHGVTV NFTCAGMSTL  600
NEHINFSESL ADPEGLCWQV LNAAWDACVP VTSENSLPCH DRESFNYLLE KAKPLNDPDG  660
RHFSAFTYLR LGPLLMERHN FLEFERFVKR MHGEAVLDLQ V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1uko_A1e-14826369411444Beta-amylase
1uko_B1e-14826369411444Beta-amylase
1uko_C1e-14826369411444Beta-amylase
1uko_D1e-14826369411444Beta-amylase
1ukp_A1e-14826369411444Beta-amylase
1ukp_B1e-14826369411444Beta-amylase
1ukp_C1e-14826369411444Beta-amylase
1ukp_D1e-14826369411444Beta-amylase
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093139.10.0PREDICTED: beta-amylase 7
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A068UKR60.0A0A068UKR6_COFCA; Beta-amylase
STRINGVIT_15s0046g02640.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16072448