PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3966_iso_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HSF
Protein Properties Length: 378aa    MW: 41322.8 Da    PI: 4.7978
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3966_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.9e-36611512101
                                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTX CS
                         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksksk 75 
                                          Fl+k+y++++d++++++isw+++g++f+v++++efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++      
  cra_locus_3966_iso_3_len_1350_ver_3  61 FLTKTYQLVDDPTIDDIISWNDDGSAFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKLVPDR------ 128
                                          9****************************************************************999...... PP

                                          TTSEEEEESXXXXXXXXXXXXXXXXX CS
                         HSF_DNA-bind  76 ekiweFkhksFkkgkkellekikrkk 101
                                             weF+++ F++g+k ll++i+r+k
  cra_locus_3966_iso_3_len_1350_ver_3 129 ---WEFSNECFRRGEKGLLCDIQRRK 151
                                          ...*********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.6E-3855145IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.4E-5857150IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-3558150IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.5E-3261150IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-206184IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-2099111IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340100124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-20112124IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
XPDSAIRSVP VALSESASAG EVSITPPSHR GLEETMPPSP AERNGGESTV GDAPRSLPTP  60
FLTKTYQLVD DPTIDDIISW NDDGSAFIVW NPTEFARDLL PKYFKHNNFS SFVRQLNTYG  120
FRKLVPDRWE FSNECFRRGE KGLLCDIQRR KVVTPAAVSP ASPTLPPVVA VKAQAPLLTV  180
SPTDSGEEQV ISSTSSPGTV REPAPNASGT AELIGENERL KKENIQLNKE LSEMKSLCNN  240
IYVLMSSYAG NNNNNNNSSS GGGNNDQSAE SSQVMKALDL LPASRSRLCE EMMNTDDGGG  300
GEDRMDLDAR LFGVAIGMKR ARQNERAMAD DYRELQLQQP GTEVKSEPLD QLNGGNSQKT  360
SWCNKQCQRQ NSISRVCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-26431509129Heat shock factor protein 1
5d5v_B7e-26431509129Heat shock factor protein 1
5d5v_D7e-26431509129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076201.11e-148PREDICTED: heat stress transcription factor B-2a-like
RefseqXP_011076202.11e-148PREDICTED: heat stress transcription factor B-2a-like
SwissprotQ6Z9C86e-83HFB2B_ORYSJ; Heat stress transcription factor B-2b
SwissprotQ9SCW44e-84HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A068VLL81e-145A0A068VLL8_COFCA; Uncharacterized protein
STRINGSolyc03g026020.2.11e-112(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460