PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3465_iso_5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 688aa    MW: 77061.3 Da    PI: 6.3237
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3465_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07625679146
                                          TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
                      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                                          r rWT+ E e+l+++vk++  +      Wk+I +       kgRt  ++k++w++
  cra_locus_3465_iso_5_len_2694_ver_3 625 RHRWTEAEVEKLKEGVKKFSAEeslsiPWKAIFEFGAdvfqKGRTSVDLKDKWRN 679
                                          569*****************************655446666*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.101.5E-5385426IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.9E-5386426IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500907.004620681IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.5E-10621686IPR009057Homeodomain-like
SuperFamilySSF466891.06E-9622682IPR009057Homeodomain-like
SMARTSM007177.5E-5624683IPR001005SANT/Myb domain
CDDcd116609.22E-12626682No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MTLAIVVEDR SGTGADTELA ERLGGEVKKK KKXXXXLLYI WIGTSLNSPE KISTVLQNDD  60
ARKSRDIPLC SSWNFPKLLQ KLHPVIQDFA VRLEINSHLK XFSDLVRNTP ELSVDIGKKC  120
KGTGSFRILE TLFAQGSQND YADASAICQK VEFNPSDSCE NVLWHMLHEM WTSNLKPGAP  180
EILKWDVQAF IAHKRNSLPM VALQKLMDAT LEEQIMQEDC YVPRAEPAKN FKLDVHMIEC  240
TAVEKLRTSA KDGPLANSSE RIAEHIDKKR CNLENEAEIG GMAMEYIGTH DAGNQHAAKK  300
FKQGVNIAAL ARVVKSIAST GDLLLTDFDF DNDGANPFAA TDGDEYHDER NDIGSKKKLS  360
LALSADTMKI PWKHNKLYVX SAIVAGNFLF CSSNTCPXVV HESCLGSAAK FDGDGKFNCS  420
FCAYSRALSE YLEVKTKASL ARKDLSTFIG LKVGNQPKLS MRSRKSKQNP VTGIDELNEN  480
HEENVDGDSL NKADHTYRRT NVEDRLQAEP SISYVGNGPP CSEKVLYLTH GELNALENEN  540
VEGEGREQER QSPIQPEEQQ IVIFQKSDGD ISSPKQADID YGNGGQALII RQNDEESSGL  600
KYSMRPRTDN EKCTYPAIPQ LRRKRHRWTE AEVEKLKEGV KKFSAEESLS IPWKAIFEFG  660
ADVFQKGRTS VDLKDKWRNI CKMDQKSE