PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3465_iso_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 603aa    MW: 67459.5 Da    PI: 5.6978
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3465_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07540594146
                                          TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
                      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                                          r rWT+ E e+l+++vk++  +      Wk+I +       kgRt  ++k++w++
  cra_locus_3465_iso_4_len_2215_ver_3 540 RHRWTEAEVEKLKEGVKKFSAEeslsiPWKAIFEFGAdvfqKGRTSVDLKDKWRN 594
                                          569*****************************655446666*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.101.2E-5300341IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.48E-5301341IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500907.004535596IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.6E-10536601IPR009057Homeodomain-like
SuperFamilySSF466898.97E-10537597IPR009057Homeodomain-like
SMARTSM007177.5E-5539598IPR001005SANT/Myb domain
CDDcd116606.11E-12541597No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MAIEALATCK QLKISKLLDL VRSAPELSDD IGKNARELVS FRILETLFAQ GSQNDYADAS  60
AICQKVEFNP SDSCENVLWH MLHEMWTSNL KPGAPEILKW DVQAFIAHKR NSLPMVALQK  120
LMDATLEEQI MQEDCYVPRA EPAKNFKLDV HMIECTAVEK LRTSAKDGPL ANSSERIAEH  180
IDKKRCNLEN EAEIGGMAME YIGTHDAGNQ HAAKKFKQGV NIAALARVVK SIASTGDLLL  240
TDFDFDNDGA NPFAATDGDE YHDERNDIGS KKKLSLALSA DTMKIPWKHN KLYVXSAIVA  300
GNFLFCSSNT CPXVVHESCL GSAAKFDGDG KFNCSFCAYS RALSEYLEVK TKASLARKDL  360
STFIGLKVGN QPKLSMRSRK SKQNPVTGID ELNENHEENV DGDSLNKADH TYRRTNVEDR  420
LQAEPSISYV GNGPPCSEKV LYLTHGELNA LENENVEGEG REQERQSPIQ PEEQQIVIFQ  480
KSDGDISSPK QADIDYGNGG QALIIRQNDE ESSGLKYSMR PRTDNEKCTY PAIPQLRRKR  540
HRWTEAEVEK LKEGVKKFSA EESLSIPWKA IFEFGADVFQ KGRTSVDLKD KWRNICKMDQ  600
KSE