PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_33244_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 88aa    MW: 9658.34 Da    PI: 8.0603
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_33244_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.0008220523
                                         TTTEEESSHHHHHHHHHHT CS
                              zf-C2H2  5 dCgksFsrksnLkrHirtH 23
                                         dCg+ Fsr++++ +H   +
  cra_locus_33244_iso_2_len_262_ver_3  2 DCGTLFSRRDSFITHRAFC 20
                                         8**************8765 PP

Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
XDCGTLFSRR DSFITHRAFC DALAEESART ISGNPLLSSQ SAIAMAPSSS SSSASQFIFS  60
MKKEQQTFNL RPEIPPWLAC PNRNPNPX
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027126921.14e-30protein indeterminate-domain 7-like
RefseqXP_027167588.14e-30protein indeterminate-domain 7
SwissprotQ8H1F57e-15IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A068TNU11e-28A0A068TNU1_COFCA; Uncharacterized protein
STRINGXP_009774627.18e-27(Nicotiana sylvestris)
STRINGPGSC0003DMT4000063858e-27(Solanum tuberosum)
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]