PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3323_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NF-X1
Protein Properties Length: 282aa    MW: 31523.2 Da    PI: 8.1695
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3323_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.59.1e-06723319
                            zf-NF-X1  3 kHkCqklCHeGpCppCp 19
                                        +HkC ++CH+G C pCp
  cra_locus_3323_iso_2_len_842_ver_3  7 NHKCPAPCHRGACAPCP 23
                                        7***************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060082.20E-7343No hitNo description
SMARTSM004380.0043524IPR000967Zinc finger, NF-X1-type
SMARTSM00438656283IPR000967Zinc finger, NF-X1-type
SMARTSM004387.9173206IPR000967Zinc finger, NF-X1-type
SMARTSM004381216234IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
XRLRCRNHKC PAPCHRGACA PCPVMVTISC ACGETHFEVP CGTETQQKPP KCPKPCRLTP  60
LCRHGAISKP HKCHYGACPT CRLICDEEYP CGHWCKLRCH GPRPPPLPEF TLKPKKKKSN  120
HEPEYIPGSP CPPCPELVWR SCLGHHIGAE RMMVCSDRTL FSCDNLCGSP LPCGNHYCTK  180
LCHRLKSDSS KSDGHIQSES CDECNLPCQK DRDPPCSHPC PLHCHPGDCP PCRSLIKRSC  240
HCGSMVHVFE CIYYNTLFEK DQMVVRSCGG PCHRKLPNCP HX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783479.11e-147PREDICTED: NF-X1-type zinc finger protein NFXL2
RefseqXP_010031213.11e-147PREDICTED: NF-X1-type zinc finger protein NFXL2
RefseqXP_016462046.11e-147PREDICTED: NF-X1-type zinc finger protein NFXL2-like
SwissprotQ9FFK81e-138NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A068V0H51e-153A0A068V0H5_COFCA; Uncharacterized protein
STRINGSolyc06g051570.2.11e-146(Solanum lycopersicum)