PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3304_iso_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 569aa    MW: 62315.8 Da    PI: 8.0196
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3304_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.7e-057092123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                         + C++C+k F r  nL+ H r H
  cra_locus_3304_iso_3_len_2148_ver_3 70 FICEICNKGFQREQNLQLHRRGH 92
                                         89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.0E-56992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.13E-66992No hitNo description
PfamPF121712.3E-57092IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00447092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.977092IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355190112142IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.13E-6142163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MSGNVFAVPS SLPVPGFSPD LINESSNPNP KPISNTNPSA KKKRNLPGTP DPDAEVIALS  60
PKTLMATNRF ICEICNKGFQ REQNLQLHRR GHNLPWKLRQ KTNKDQVKKK VYICPEKSCV  120
HHDPCRALGD LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS DWKAIQKLAE LENINAIVEH  180
FSPGIYIEFN FENILCTDTN YLHLLRTNDY VQLMFVIITE LNFFLLQEGS FITHRAFCDA  240
LAEESSRITS IPTSNLNFRN DLPAHVFTGG STGIPQIGGA EFGNQLKPPP PRLSLWLDQA  300
NSQQLNSVDV SGNSSIYMNS ANIFTSSAGG NLSLSPLPPL QQSLKDVDGG IMNKSTSMAE  360
TLSSLFSDDN HRNIGSNSSG PMSATALLQK AAQMGSTKSN PIFFSNSLGV MSSSNSSSSS  420
PVPVPVPAFS LSHNRNQQLL QTTTSSLDNN SFEFDQSMLQ TSQNESPSTT TVTMMNFQGQ  480
GLNGGSVEHH NSLTRDFLGM GAGEGGRPLL PHELAKFASM SSAMGLDLGH FSSHHXSQSA  540
LVSTNVAYHS PSETDSIQTR NREFITLYT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027175139.11e-152zinc finger protein JACKDAW
TrEMBLA0A068UDX21e-149A0A068UDX2_COFCA; Uncharacterized protein
STRINGcassava4.1_032876m1e-148(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350