PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_31727_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 301aa    MW: 33305.4 Da    PI: 8.0669
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_31727_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-05123123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                         ++C++C+k +  +s++k H++t+
  cra_locus_31727_iso_1_len_920_ver_3  1 WVCEKCSKGYAVQSDYKAHLKTC 23
                                         58*******************98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
WVCEKCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDACN MGRIRSESHS  60
LPASAAACLS RTASSPSPST ETNLSAAAPP WPPLLMPKPI HTNFLITPKN KSSSNRGEQS  120
RDSNLELQLL TTSSPVDLST FKRDEEYHST QLQLSIGSSD FSDKNELEIS NININATMGC  180
SRRHHDQEEE ANIRDELRAA MAEKAYAEEA RKQAKRQIEL AEAEFVNAKR IRQQAQAELE  240
KAVAFKQLSA KKINATILEI TCHTCKDKFQ ASAARTTSSS LTVGEVVGKG DRFLHPKFTL  300
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-18150756Zinc finger protein JACKDAW
5b3h_F8e-18150756Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027125330.11e-119zinc finger protein SHOOT GRAVITROPISM 5-like isoform X2
RefseqXP_027167236.11e-119zinc finger protein SHOOT GRAVITROPISM 5-like isoform X2
TrEMBLA0A068TRJ71e-117A0A068TRJ7_COFCA; Uncharacterized protein
STRINGXP_002534293.11e-107(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10222482