PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_30069_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 303aa    MW: 33868 Da    PI: 5.7498
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_30069_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.6e-30139197259
                                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                           +D+++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ve+s +dp+++++tY+ eH h+
  cra_locus_30069_iso_1_len_1105_ver_3 139 SDKWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVEQSCKDPSIFIVTYTAEHSHS 197
                                           79*************************998****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-31124199IPR003657WRKY domain
SuperFamilySSF1182902.35E-26133199IPR003657WRKY domain
PROSITE profilePS5081132.248133199IPR003657WRKY domain
SMARTSM007741.0E-34138198IPR003657WRKY domain
PfamPF031062.3E-25140196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSGFEDNWGL QAIVGGKSFS SAISALPIPN SSCYSIMDHM SEHRDLANNF PDLFETMFTD  60
DDRLEQLYKP FYPVVSSDSS SESIIQQVEE KLFVEEDEKK SNFCPVESAT TVDYVPKYKR  120
RKNQQKRVVI QVTAEDLSSD KWAWRKYGQK PIKGSPYPRS YYRCSSSKGC LARKQVEQSC  180
KDPSIFIVTY TAEHSHSQPT KKNALAGTVR HKFPNPKTPS KATSSSSKLV AKAKDSSSSV  240
PSPLIPSVEN VKQEMMSIEE DDNNIIFSGV KLDDEFFSGL EDLDELISEL GMGCGSSKLF  300
PTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-19127199274WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00448DAPTransfer from AT4G23550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081142.16e-81PREDICTED: probable WRKY transcription factor 29
TrEMBLK7PDM80.0K7PDM8_CATRO; WRKY22
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57812335