PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_29143_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 126aa    MW: 14166.3 Da    PI: 7.2733
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_29143_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-053153123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                         ++Cp+C k+Fs+   L  H r+H
  cra_locus_29143_iso_1_len_715_ver_3 31 HECPICFKVFSSGQALGGHKRSH 53
                                         79*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.09E-62754No hitNo description
Gene3DG3DSA:3.30.160.604.2E-42853IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-123054IPR007087Zinc finger, C2H2
PROSITE profilePS501579.393153IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
XHHQIKKNRI SSSNIVVDDH NGGSNRNNKV HECPICFKVF SSGQALGGHK RSHLIADAKS  60
NQQNTTTTSV KKVSEIRDFL DLNLPPPPPL QPEDEESSDQ AYFNSWWIGS NHSHEQQQQQ  120
QLVGLL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027169063.12e-30uncharacterized protein LOC113768782
TrEMBLA0A068VCX26e-28A0A068VCX2_COFCA; Uncharacterized protein
TrEMBLA0A1S4DPL04e-28A0A1S4DPL0_TOBAC; zinc finger protein ZAT4-like isoform X2
STRINGXP_009595361.11e-28(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241