PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2845_iso_5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 401aa    MW: 44919.3 Da    PI: 4.4167
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2845_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.3e-11214259555
                                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                          h ++Er+RR+ + ++f  L +l+P +     kK++K ++L  A++Y+k+Lq
  cra_locus_2845_iso_5_len_1555_ver_3 214 HIIAERKRREILSQRFMALSTLVPGL-----KKMDKTSVLGDAIKYLKYLQ 259
                                          899***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.716209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-16210274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-9214259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-15214273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-12214263No hitNo description
SMARTSM003531.1E-12215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MTDNSGISNW FTELGMEDPN NFLMINNDDE CDVMEFLNED ICAATVGQDY YFQISPTFSL  60
NTTSTLYPSS SSTPMDILDQ SPPFMLDDDI DETMNRRPAK QLKSTSNNNQ NNQNPSTIHD  120
SFDAQMSTPY LLTFGNPNSP EIINPPHHQQ HHQPNATLNL NPSDEDVQVS EVFNSQSSSY  180
GNLIEEEAAA PKSSKPTSKK SGGRVRPASQ TYDHIIAERK RREILSQRFM ALSTLVPGLK  240
KMDKTSVLGD AIKYLKYLQE RVQILEDQAA KQTMESVVMV KKSHVFIQEE EDDEEGSSDD  300
QITSDGGSSE EHPLPEIEVK VCNKTLLLRI HCEKQKGVLI KLLNEIERLN LGVTNINVAP  360
FGSLALDITI IAEMEKEYNM TTVQVIKNLR SVLLNSPPMA D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217222ERKRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027107757.11e-107transcription factor bHLH18-like
TrEMBLA0A0M3LQV60.0A0A0M3LQV6_CATRO; BHLH iridoid synthesis 2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461