PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2744_iso_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 204aa    MW: 23591.2 Da    PI: 9.0068
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2744_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.9e-173479148
                                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                        rg++T+ E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
  cra_locus_2744_iso_3_len_918_ver_3 34 RGKMTPHEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 79
                                        89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-211485IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-71640IPR009057Homeodomain-like
PROSITE profilePS5129426.4642983IPR017930Myb domain
SMARTSM007171.8E-163381IPR001005SANT/Myb domain
PfamPF002495.6E-153478IPR001005SANT/Myb domain
CDDcd001672.64E-113679No hitNo description
Gene3DG3DSA:1.10.10.602.9E-204180IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
FIAKVSGLKV AGDTNNGKSC RLRWVNYLHP GLKRGKMTPH EERLVLELHS KWGNRWSRIA  60
RKLPGRTDNE IKNYWRTHMR KKAQDQRKKA SNNNNNLSPT SSSSLSNCSS SSSNSQGNNS  120
PTVDSVLITE TKDRSFYDTG GFEFDQIEAE KKKNMSNEEE TEELERGPKF YSMDEIWKDI  180
EMSEDDAIKP VNYDYQKMDS PQMW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-17178339105MYB PROTO-ONCOGENE PROTEIN
1h88_C5e-17178393159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-17178393159MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-17178362128MYB TRANSFORMING PROTEIN
1mse_C3e-17178339105C-Myb DNA-Binding Domain
1msf_C3e-17178339105C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651059.11e-67PREDICTED: transcription factor MYB59
SwissprotQ9LX826e-55MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A068UKJ22e-65A0A068UKJ2_COFCA; Uncharacterized protein
STRINGVIT_06s0004g04140.t016e-63(Vitis vinifera)