PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_26645_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 171aa    MW: 19070 Da    PI: 10.1588
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_26645_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-2083134256
                                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                          +y+GVr+++ +g+++AeIrd + ng  +r++lg+f taeeAa a+++a+ +++g+
  cra_locus_26645_iso_1_len_810_ver_3  83 HYRGVRRRP-WGKYAAEIRDSTRNG--ARVWLGTFETAEEAALAYDRAAFRMRGA 134
                                          8********.**********44465..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.5E-3282142IPR001471AP2/ERF domain
CDDcd000189.30E-3382141No hitNo description
PfamPF008477.4E-1583133IPR001471AP2/ERF domain
PROSITE profilePS5103223.80283141IPR001471AP2/ERF domain
SMARTSM003807.9E-3783147IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2483142IPR016177DNA-binding domain
PRINTSPR003671.6E-118495IPR001471AP2/ERF domain
PRINTSPR003671.6E-11107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
XKTSQLLLQK QKILQXAMFP SPQYCELPLN ENDSQEIILH EILSQATEIS NPESSSKLPS  60
RNQQSFLSHL LPRSTHNSIG KKHYRGVRRR PWGKYAAEIR DSTRNGARVW LGTFETAEEA  120
ALAYDRAAFR MRGAKALLNF PSQVLAAAAE STQKLVHVPN SSSNSDKASG D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-3482144466ATERF1
3gcc_A2e-3482144466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid. {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:11768541, ECO:0000269|PubMed:11971137}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: The stronger expression mediated by Pseudomonas syringae tomato during an incompatible interaction (avirulent T1 avrPto strain) than during a compatible one (virulent T1 strain) requires the resistance PTO-R as well as the Pseudomonas resistance and fenthion sensitivity (PRF) gene products. This induction is independent of ethylene (ET), jasmonate (JA) and salicylic acid (SA), and subsequent transcription of PTI5 does not require de novo protein synthesis. Also induced by Xanthomonas oryzae strain PXOA avrXa10, by Pseudomonas fluorescens strain 2-79, by PTO and by cycloheximide. Seems to not be influenced by abiotic stresses (ET, SA, JA and wounding). {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:9878629}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027105430.19e-59pathogenesis-related genes transcriptional activator PTI5-like
SwissprotO046812e-55PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A068TKE62e-57A0A068TKE6_COFCA; Uncharacterized protein
TrEMBLV5REQ62e-57V5REQ6_COFAR; ERF transcription factor 11
STRINGPGSC0003DMT4000278492e-55(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165