PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_25985_iso_5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 509aa    MW: 55201.5 Da    PI: 9.3192
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_25985_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-057496123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                          + C+ C+k F r  nL+ H r H
  cra_locus_25985_iso_5_len_1865_ver_3 74 FICEVCNKGFQREQNLQLHRRGH 96
                                          89*******************88 PP

2zf-C2H212.80.00037150172123
                                           EEETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                           +kC +C+k +  +s+ k H +t+
  cra_locus_25985_iso_5_len_1865_ver_3 150 FKCDKCSKKYAVQSDWKAHSKTC 172
                                           89*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.7E-87396No hitNo description
Gene3DG3DSA:3.30.160.605.5E-67396IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.997496IPR007087Zinc finger, C2H2
PfamPF121712.4E-57496IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00527496IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SMARTSM00355130115145IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-5138171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.7E-8145170No hitNo description
SMARTSM0035599150170IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MAAAASSSGV FLSMREGDDS QQTNQLGHHL QAPALPASSS QPQNPAPKRR RNQPDPDAEV  60
IALSPKTLMA TNRFICEVCN KGFQREQNLQ LHRRGHNLPW KLRQKTTKEV KRKVYLCPEP  120
TCVHHDPSRA LGDLTGIKKH YSRKHGEKKF KCDKCSKKYA VQSDWKAHSK TCGTREYRCD  180
CGXPFLRRDS FITHRAFCDA LAQESARNPP SLTGIGSHLF GNTTSNGNNM SLGLSQLSAQ  240
ISASQDQNQN HSHSASDILR LGNNSRQFEQ HHHHNHNLIG AAGVGSSSTM QGSSAFRTPS  300
QTMPLPSSSF FLPPDHHQPD DQDYRHHHEH HHQPSLHHHG LMRLSDLHNN VPQSTAPNIF  360
NLSFFPTSMA ETTNNVGGGG GLLQLPNPFN NGHNSSGGGG SSNELGSSLF SSSGSLVGGG  420
GDMTSAIPSL YSSSILHHHQ SHGDVGHMSA TALLQKAAQL GSTTSNSSAS SLLKSFGSTT  480
SNGSVFGTAT DHHHHHQNNV NGGNNNNHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-30146207364Zinc finger protein JACKDAW
5b3h_F2e-30146207364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006379802.21e-160protein indeterminate-domain 5, chloroplastic
RefseqXP_006379803.21e-160protein indeterminate-domain 5, chloroplastic
RefseqXP_006379804.21e-160protein indeterminate-domain 5, chloroplastic
RefseqXP_024463340.11e-160protein indeterminate-domain 5, chloroplastic
RefseqXP_024463341.11e-160protein indeterminate-domain 5, chloroplastic
SwissprotQ9ZUL31e-116IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A2K1ZH361e-158A0A2K1ZH36_POPTR; Uncharacterized protein
STRINGPOPTR_0008s14180.41e-159(Populus trichocarpa)
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]