PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_25985_iso_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 512aa    MW: 55455.8 Da    PI: 9.4747
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_25985_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-057799123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                          + C+ C+k F r  nL+ H r H
  cra_locus_25985_iso_4_len_1874_ver_3 77 FICEVCNKGFQREQNLQLHRRGH 99
                                          89*******************88 PP

2zf-C2H212.80.00037153175123
                                           EEETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                           +kC +C+k +  +s+ k H +t+
  cra_locus_25985_iso_4_len_1874_ver_3 153 FKCDKCSKKYAVQSDWKAHSKTC 175
                                           89*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.6E-67699IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.8E-87699No hitNo description
PROSITE profilePS5015710.997799IPR007087Zinc finger, C2H2
PfamPF121712.5E-57799IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00527799IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SMARTSM00355130118148IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-5141174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.8E-8148173No hitNo description
SMARTSM0035599153173IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MAAAASSSGV FLSMREGDDS QQTNQLGHHL QAPALPASSS QPQNPAPKRR RNQPGTPNPD  60
AEVIALSPKT LMATNRFICE VCNKGFQREQ NLQLHRRGHN LPWKLRQKTT KEVKRKVYLC  120
PEPTCVHHDP SRALGDLTGI KKHYSRKHGE KKFKCDKCSK KYAVQSDWKA HSKTCGTREY  180
RCDCGXPFLR RDSFITHRAF CDALAQESAR NPPSLTGIGS HLFGNTTSNG NNMSLGLSQL  240
SAQISASQDQ NQNHSHSASD ILRLGNNSRQ FEQHHHHNHN LIGAAGVGSS STMQGSSAFR  300
TPSQTMPLPS SSFFLPPDHH QPDDQDYRHH HEHHHQPSLH HHGLMRLSDL HNNVPQSTAP  360
NIFNLSFFPT SMAETTNNVG GGGGLLQLPN PFNNGHNSSG GGGSSNELGS SLFSSSGSLV  420
GGGGDMTSAI PSLYSSSILH HHQSHGDVGH MSATALLQKA AQLGSTTSNS SASSLLKSFG  480
STTSNGSVFG TATDHHHHHQ NNVNGGNNNN HR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-30149210364Zinc finger protein JACKDAW
5b3h_F2e-30149210364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006379802.21e-165protein indeterminate-domain 5, chloroplastic
RefseqXP_006379803.21e-165protein indeterminate-domain 5, chloroplastic
RefseqXP_006379804.21e-165protein indeterminate-domain 5, chloroplastic
RefseqXP_024463340.11e-165protein indeterminate-domain 5, chloroplastic
RefseqXP_024463341.11e-165protein indeterminate-domain 5, chloroplastic
SwissprotQ9ZUL31e-120IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A2K1ZH361e-163A0A2K1ZH36_POPTR; Uncharacterized protein
STRINGPOPTR_0008s14180.41e-164(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]