PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_25985_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 441aa    MW: 48043.6 Da    PI: 9.3295
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_25985_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.1e-05628123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                          + C+ C+k F r  nL+ H r H
  cra_locus_25985_iso_2_len_1427_ver_3  6 FICEVCNKGFQREQNLQLHRRGH 28
                                          89*******************88 PP

2zf-C2H2130.0003182104123
                                           EEETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                           +kC +C+k +  +s+ k H +t+
  cra_locus_25985_iso_2_len_1427_ver_3  82 FKCDKCSKKYAVQSDWKAHSKTC 104
                                           89*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.64E-8528No hitNo description
Gene3DG3DSA:3.30.160.604.7E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.99628IPR007087Zinc finger, C2H2
PfamPF121712.0E-5628IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0052628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551304777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.64E-877102No hitNo description
SMARTSM003559982102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLRQKTTK EVKRKVYLCP EPTCVHHDPS  60
RALGDLTGIK KHYSRKHGEK KFKCDKCSKK YAVQSDWKAH SKTCGTREYR CDCGXPFLRR  120
DSFITHRAFC DALAQESARN PPSLTGIGSH LFGNTTSNGN NMSLGLSQLS AQISASQDQN  180
QNHSHSASDI LRLGNNSRQF EQHHHHNHNL IGAAGVGSSS TMQGSSAFRT PSQTMPLPSS  240
SFFLPPDHHQ PDDQDYRHHH EHHHQPSLHH HGLMRLSDLH NNVPQSTAPN IFNLSFFPTS  300
MAETTNNVGG GGGLLQLPNP FNNGHNSSGG GGSSNELGSS LFSSSGSLVG GGGDMTSAIP  360
SLYSSSILHH HQSHGDVGHM SATALLQKAA QLGSTTSNSS ASSLLKSFGS TTSNGSVFGT  420
ATDHHHHHQN NVNGGNNNNH R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-3078139364Zinc finger protein JACKDAW
5b3h_F3e-3078139364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021691809.11e-142protein indeterminate-domain 5, chloroplastic-like
SwissprotQ9ZUL31e-105IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A2K1ZH361e-139A0A2K1ZH36_POPTR; Uncharacterized protein
TrEMBLB9S7A91e-139B9S7A9_RICCO; Nucleic acid binding protein, putative
STRINGPOPTR_0008s14180.41e-139(Populus trichocarpa)
STRINGXP_002521878.11e-140(Ricinus communis)
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]