PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_25625_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HSF
Protein Properties Length: 164aa    MW: 19133.5 Da    PI: 11.0138
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_25625_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind83.43.3e-2626927103
                                          EEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXX CS
                         HSF_DNA-bind  27 sfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrk 100
                                          sfvv+d+++fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll++i+r+
  cra_locus_25625_iso_1_len_490_ver_3   2 SFVVWDPQNFAMNLLPRYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLRGQRHLLRTIRRR 66 
                                          8***************************************999.........********************** PP

                                          XXX CS
                         HSF_DNA-bind 101 kse 103
                                          k++
  cra_locus_25625_iso_1_len_490_ver_3  67 KHT 69 
                                          975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.9E-29166IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-22266IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-26266IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.07E-23266IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.0E-111527IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043401640IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-112840IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
XSFVVWDPQN FAMNLLPRYF KHNNFSSFVR QLNTYGFRKV DPDKWEFANE GFLRGQRHLL  60
RTIRRRKHTT SSQVLPSGGG SSNSSSSSSR QGLESSCVEV GRFGLDEEVD RLRRDKQVLM  120
VELVKLRQQQ QHTKSYLKTM EQRLKGTEVK QQQMMTFLAK ALQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-1627145125Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016486569.16e-84PREDICTED: heat stress transcription factor A-6b-like isoform X1
SwissprotQ9LUH82e-72HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A068TT322e-79A0A068TT32_COFCA; Uncharacterized protein
TrEMBLM5W4S92e-80M5W4S9_PRUPE; Uncharacterized protein
STRINGBra033913.1-P4e-76(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113