PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2560_iso_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family G2-like
Protein Properties Length: 302aa    MW: 33884.8 Da    PI: 5.1304
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2560_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like29.12.2e-091203655
                              G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                                         m+++gLtl+h+kSHLQkYRl
  cra_locus_2560_iso_4_len_1352_ver_3  1 MGIHGLTLYHLKSHLQKYRL 20
                                         99*****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-8122IPR009057Homeodomain-like
PfamPF143791.0E-2167114IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGIHGLTLYH LKSHLQKYRL GKSQQSQTYS EPKQEEQCEA DEGENQVTSQ LSGEICDKAQ  60
HQINESMKIA QALQMQMEVQ RKLYEQIEVQ RHLQLRIEAQ GKYLQSVLRK AQETLAGYNP  120
SSAVGIELAK EELSQLVTMV DMGCCQNSSL SALTDTDQEN PILKHIENKQ QQFRSNGCSL  180
ESSLTSSDQS SGLKELAETR CGNDENENWT RQSVVLSLME MQPGQKNGER KRMAAISAKQ  240
QPSAKRFQSQ KSAADDDDQG ERKFGFLETI DLNSKCIVSD FDSGTKIIDL NSKGVEQPNG  300
YI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027097729.13e-93myb family transcription factor PHL8-like isoform X1
TrEMBLA0A068TVN43e-79A0A068TVN4_COFCA; Uncharacterized protein
STRINGXP_008339891.12e-78(Malus domestica)