PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2560_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family G2-like
Protein Properties Length: 321aa    MW: 35913 Da    PI: 5.4827
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2560_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like56.84.9e-182391555
                              G2-like 15 veaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                                         v+av+qLG   kAtPk+++++m+++gLtl+h+kSHLQkYRl
  cra_locus_2560_iso_2_len_1075_ver_3  2 VDAVNQLG---KATPKSLMRVMGIHGLTLYHLKSHLQKYRL 39
                                         89*****4...9****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-16241IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-11240IPR006447Myb domain, plants
SuperFamilySSF466898.6E-6440IPR009057Homeodomain-like
PfamPF143791.1E-2186133IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
XVDAVNQLGK ATPKSLMRVM GIHGLTLYHL KSHLQKYRLG KSQQSQTYSE PKQEEQCEAD  60
EGENQVTSQL SGEICDKAQH QINESMKIAQ ALQMQMEVQR KLYEQIEVQR HLQLRIEAQG  120
KYLQSVLRKA QETLAGYNPS SAVGIELAKE ELSQLVTMVD MGCCQNSSLS ALTDTDQENP  180
ILKHIENKQQ QFRSNGCSLE SSLTSSDQSS GLKELAETRC GNDENENWTR QSVVLSLMEM  240
QPGQKNGERK RMAAISAKQQ PSAKRFQSQK SAADDDDQGE RKFGFLETID LNSKCIVSDF  300
DSGTKIIDLN SKGVEQPNGY I
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027151333.11e-105myb family transcription factor PHL8-like
TrEMBLA0A068TVN44e-85A0A068TVN4_COFCA; Uncharacterized protein
STRINGXP_008339891.11e-88(Malus domestica)