PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_22981_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 432aa    MW: 48201.2 Da    PI: 9.7708
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_22981_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-0579101123
                                           EEETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                           ++C++C+k F r  nL+ H r H
  cra_locus_22981_iso_2_len_1439_ver_3  79 FVCEICNKGFQRDQNLQLHRRGH 101
                                           89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.42E-577102No hitNo description
Gene3DG3DSA:3.30.160.601.4E-578101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.94979101IPR007087Zinc finger, C2H2
PfamPF121716.7E-579101IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MAMMFPSLMS NSTSLSEDAN VSSITRVQDF CSLNPMLPTI SSNHLPQKIK KKRNLPGNPD  60
PNAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NNKENKKRAY  120
VCPEPTCLHH HPSRALGDLT GIKKHYCRKH GEKKXXXXXX XXXXXXXXXX XXXXXYSQSI  180
LDALAEESAR LSAKNSIMLA PPPPPTNLAA HPTFPASSQF SFSSQQHQRH FPNPPTHHHI  240
SFNPWDPNSQ NPNPSPNPND QIIHNIKPDN NNIPAPISSS LFFHEPPPSP RPNYPNIQTL  300
INESSLSATA LLQKATTLGV HNVGRVNSTM MTAAQLDRIR SHVSTGSIIP ELPGNLSTWQ  360
KSDVRLTRDF LGLTGSDGNG NVDDGNVHVN MRGRMVSLVE LPTYERDFSQ ILKNHNFGFT  420
EPAAASETWG NC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027096028.11e-134zinc finger protein GAI-ASSOCIATED FACTOR 1-like
RefseqXP_027115030.11e-134zinc finger protein GAI-ASSOCIATED FACTOR 1-like
TrEMBLA0A068U5641e-131A0A068U564_COFCA; Uncharacterized protein
STRINGVIT_00s0179g00170.t011e-114(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350