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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_22981_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 432aa MW: 48201.2 Da PI: 9.7708 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.5 | 1.2e-05 | 79 | 101 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H cra_locus_22981_iso_2_len_1439_ver_3 79 FVCEICNKGFQRDQNLQLHRRGH 101 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.42E-5 | 77 | 102 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-5 | 78 | 101 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.949 | 79 | 101 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 6.7E-5 | 79 | 101 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 81 | 101 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MAMMFPSLMS NSTSLSEDAN VSSITRVQDF CSLNPMLPTI SSNHLPQKIK KKRNLPGNPD 60 PNAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NNKENKKRAY 120 VCPEPTCLHH HPSRALGDLT GIKKHYCRKH GEKKXXXXXX XXXXXXXXXX XXXXXYSQSI 180 LDALAEESAR LSAKNSIMLA PPPPPTNLAA HPTFPASSQF SFSSQQHQRH FPNPPTHHHI 240 SFNPWDPNSQ NPNPSPNPND QIIHNIKPDN NNIPAPISSS LFFHEPPPSP RPNYPNIQTL 300 INESSLSATA LLQKATTLGV HNVGRVNSTM MTAAQLDRIR SHVSTGSIIP ELPGNLSTWQ 360 KSDVRLTRDF LGLTGSDGNG NVDDGNVHVN MRGRMVSLVE LPTYERDFSQ ILKNHNFGFT 420 EPAAASETWG NC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027096028.1 | 1e-134 | zinc finger protein GAI-ASSOCIATED FACTOR 1-like | ||||
Refseq | XP_027115030.1 | 1e-134 | zinc finger protein GAI-ASSOCIATED FACTOR 1-like | ||||
TrEMBL | A0A068U564 | 1e-131 | A0A068U564_COFCA; Uncharacterized protein | ||||
STRING | VIT_00s0179g00170.t01 | 1e-114 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |