PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2220_iso_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 273aa    MW: 30836.4 Da    PI: 7.5868
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2220_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.11.3e-10177224448
                                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
                      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                                          WT  E ++l+d+v q+G g+W+ I + +     +Rt+ ++k++w+++l
  cra_locus_2220_iso_4_len_1245_ver_3 177 WTVSEVKKLIDGVSQYGVGRWSHIKKDLFsssAHRTAVDLKDKWRNLL 224
                                          **********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.901169228IPR017930Myb domain
SuperFamilySSF466894.34E-16171234IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-13171230IPR009057Homeodomain-like
SMARTSM007171.4E-10173226IPR001005SANT/Myb domain
CDDcd116608.53E-21177225No hitNo description
PfamPF002491.8E-8177224IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
NFPVMLNQVM GDESAIPFLE DEAIEFECLL IEPQDRHISV DGFLCFRRNS PEKYVQLEDV  60
HCEFGGALGI KQEEEHLLGQ EVIHPKPIAS MAISEGDCIS SRKKQTPVAP KVLHSKPIAS  120
VAKSEEDFVS SQQMQLCIVP KVLDSEPVAS VATSGEDSLS IMKTVEEGGR RKHHILWTVS  180
EVKKLIDGVS QYGVGRWSHI KKDLFSSSAH RTAVDLKDKW RNLLKATCVQ TEGKRGEDKK  240
RNLAWRPLPK SVIRRVRELA VLYPYPRDFQ TKH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015088499.11e-48PREDICTED: uncharacterized protein LOC107031587 isoform X2
RefseqXP_015088500.17e-49PREDICTED: uncharacterized protein LOC107031587 isoform X3
RefseqXP_015088501.16e-49PREDICTED: uncharacterized protein LOC107031587 isoform X4
TrEMBLA0A068UDZ06e-61A0A068UDZ0_COFCA; Uncharacterized protein
STRINGSolyc09g007990.2.14e-47(Solanum lycopersicum)