PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2220_iso_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 458aa    MW: 51280.7 Da    PI: 8.0735
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2220_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.12.7e-10362409448
                                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
                      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                                          WT  E ++l+d+v q+G g+W+ I + +     +Rt+ ++k++w+++l
  cra_locus_2220_iso_3_len_1798_ver_3 362 WTVSEVKKLIDGVSQYGVGRWSHIKKDLFsssAHRTAVDLKDKWRNLL 409
                                          **********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.901354413IPR017930Myb domain
SuperFamilySSF466891.05E-15356419IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-13356414IPR009057Homeodomain-like
SMARTSM007171.4E-10358411IPR001005SANT/Myb domain
PfamPF002493.8E-8362409IPR001005SANT/Myb domain
CDDcd116601.82E-20362410No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
XTCEDYLLGE LLAXNIESGE SITKLDYHLG KGSQNLVLES HTEENKAGYN GPPQESQLSC  60
PIDWMHDFPE DLDMNDYESN GIFSCSPNSE LSADRWFKYP TSFPVESIEQ LEDVSGMFPV  120
KNEKNTTSSP GLKSEEMFCS SITEQQNVYE SVGQHAEGEP NIGQDVSRCP PQGSVICPPT  180
GKRLRKPPHR FIDELLEPNS RQVRRKFSIP ASKGKSSNVK HHKHYCVKSK AERSFSGEPA  240
AIAIQVPFGP LICEEREKKQ VPVVTKVIHP KPIASMAISE GDCISSRKKQ TPVAPKVLHS  300
KPIASVAKSE EDFVSSQQMQ LCIVPKVLDS EPVASVATSG EDSLSIMKTV EEGGRRKHHI  360
LWTVSEVKKL IDGVSQYGVG RWSHIKKDLF SSSAHRTAVD LKDKWRNLLK ATCVQTEGKR  420
GEDKKRNLAW RPLPKSVIRR VRELAVLYPY PRDFQTKH