PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_22026_iso_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HSF
Protein Properties Length: 104aa    MW: 11779.4 Da    PI: 7.3596
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_22026_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind668.5e-2132104260
                                          HHHHHHHHHCTG..............GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
                         HSF_DNA-bind   2 Flkklyeilede..............elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 
                                          Fl+k++++le+e                ++++sw+ +g+ fvv+ + ef++ +LpkyFkh+nf+SF+RQLn+Y
  cra_locus_22026_iso_3_len_345_ver_3  32 FLSKTFDLLEEEedkediekmmkrtgGGQRIVSWNGEGTGFVVWSPAEFSQLILPKYFKHNNFSSFIRQLNTY 104
                                          99999999997777778888888887899*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-2225104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.7E-628104IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.1E-1832104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.22E-1660104IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MAKDLGEEGA IIISRRSGGQ TSSLRTKCPA PFLSKTFDLL EEEEDKEDIE KMMKRTGGGQ  60
RIVSWNGEGT GFVVWSPAEF SQLILPKYFK HNNFSSFIRQ LNTY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232865.11e-34PREDICTED: heat stress transcription factor B-2a-like
SwissprotQ963202e-23HSFB1_ARATH; Heat stress transcription factor B-1
TrEMBLK4B9582e-34K4B958_SOLLC; Uncharacterized protein
STRINGSolyc02g078340.2.15e-34(Solanum lycopersicum)