PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2165_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 208aa    MW: 23286.9 Da    PI: 8.7603
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2165_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000713760123
                                         EEETTTTEEESSHHHHHHHHHH.T CS
                              zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                                         +kC+ C+k  s+   ++ H    H
  cra_locus_2165_iso_1_len_1042_ver_3 37 FKCHVCHKKLSTAGGMQIHVLQvH 60
                                         89*****************87655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5080811.78867IPR003656Zinc finger, BED-type
SuperFamilySSF576679.86E-51262No hitNo description
SMARTSM00355181336IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801536IPR007087Zinc finger, C2H2
SMARTSM003550.033760IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803960IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006506Biological ProcessGPI anchor biosynthetic process
GO:0009846Biological Processpollen germination
GO:0009860Biological Processpollen tube growth
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0017176Molecular Functionphosphatidylinositol N-acetylglucosaminyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MGKKKKRANS SKVWCYYCDR EFEDEKILVQ HQKAKHFKCH VCHKKLSTAG GMQIHVLQVH  60
KETVNKVPNA KPGRESTDIE IYGMQGIPPD VLAAHYGEED DEAPSKAAKV DIPSSQIVGA  120
AVPGPLGMAY PPQPMPPMLH KIAYVNMGTR IRGSFPPSQP KWRKIAYGGI QPGFEDNHTD  180
DSFLEDMIMN ANVVKRDLPK VCICYPLY
Functional Description ? help Back to Top
Source Description
UniProtSequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694, ECO:0000269|PubMed:19121105, ECO:0000269|PubMed:21282526}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031840.12e-82PREDICTED: protein SUPPRESSOR OF FRI 4-like isoform X3
SwissprotQ9C5G03e-70SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBLB9GZ072e-80B9GZ07_POPTR; Uncharacterized protein
STRINGPOPTR_0003s07180.16e-81(Populus trichocarpa)
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]
  2. Resentini F, et al.
    SUPPRESSOR OF FRIGIDA (SUF4) Supports Gamete Fusion via Regulating Arabidopsis EC1 Gene Expression.
    Plant Physiol., 2017. 173(1): p. 155-166
    [PMID:27920160]