PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_21529_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family FAR1
Protein Properties Length: 795aa    MW: 91115.7 Da    PI: 5.9918
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_21529_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR11011.2e-3186177291
                                  FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek 72 
                                           fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+  +++ +r+r+ tr+gCka+l vk ++
  cra_locus_21529_iso_2_len_2750_ver_3  86 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKIQD 158
                                           9***************************************998888545677889****************** PP

                                  FAR1  73 dgkwevtkleleHnHelap 91 
                                           +gkw+v+++++eHnHel+p
  cra_locus_21529_iso_2_len_2750_ver_3 159 SGKWVVSNFVKEHNHELVP 177
                                           *****************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.9E-3086177IPR004330FAR1 DNA binding domain
PfamPF105512.6E-32298390IPR018289MULE transposase domain
PfamPF044341.5E-12566612IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.313578614IPR007527Zinc finger, SWIM-type
SMARTSM005753.6E-10589616IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MENGVIEFDI GLGGSIGGGE DDPLDIEDHR HDHMDNDETI ADLSPTAASI SGRGYGLQES  60
YIPEGDLDLE PYEGMEFESE EAAKAFYNSY ARRVGFSTRV SSSRRSRKDG AIIQRSFVCA  120
KEGFRNLNEK RTKDREIKRP RTITRVGCKA SLSVKIQDSG KWVVSNFVKE HNHELVPPDQ  180
VHCLRSHRQI SGPAKTLIDT LQAAGMGPRR IMSALIKEYG GISKVGFTEV DCRNYMRNNR  240
QRSLEGDIQL LLDYLKQMQS ENPAFFYAVQ GDEEQYTGNV LWADPKAMAN YTYFGDTVTF  300
DTTYRSNRYR LPFAPFTGVN NHGQPVLFGC AFLINESEAS FVWLFKTWLE AMSGHPPVSI  360
TTDYDALIQS AVMQVFPETR HRFCKWHIFK KCQEKLSLVF LEHPNFEAEF HKCVDLTESI  420
EEFESCWFSL LDKHELRDYE WLQAIYGARS QWVPVYLRDT FFAEMSITQP SDSINSYFDG  480
YVNASTNLNQ FFKLYEKALE SRNEKEVKAD YETLNGSPIL MTPSPMEKQA SELYTRKLFM  540
RFQEELVGTL TFMASKADDD GEITTYQVAK FGEDHKAYYV RFNVLEMKAS CSCRMFEFSG  600
ILCRHILAVF RVTNVLTLPS HYILKRWTRN AKSCIALDEH VNDVFSSYLE SHTVRYNTLR  660
HEAFKFVDEG AESVETYTVA MAALEEAIEK VSKEMKNEGK ISTVSGRIRD DSKRNGIQAN  720
HSTQNNQGSF AQQLSEEERD KKIGELAREL DFANRRCEVY RANLLAVLKD IEDHKRQLSI  780
KVQNVKITMK DGFLG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075861.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
RefseqXP_012075922.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A067LI070.0A0A067LI07_JATCU; Uncharacterized protein
STRINGPOPTR_0004s21880.10.0(Populus trichocarpa)