PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_211_iso_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 214aa    MW: 23639.8 Da    PI: 7.1265
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_211_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005104119116
                                         EEETTTTEEESSHHHH CS
                             zf-C2H2   1 ykCpdCgksFsrksnL 16 
                                         ykC+ C+k Fs+   L
  cra_locus_211_iso_4_len_1321_ver_3 104 YKCSVCDKAFSSYQAL 119
                                         9**********98776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.8E-10104123IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-4104123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.221104132IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MALEALNSPT TPTPVFQYEN AATLRYLDQP WAKGKRSKRP RSVEPPPPQH QQQQQPTEEE  60
YLALCLIMLA RGGAPSTTTL PLPPPPQQHN IPSSSSSDPP KLLYKCSVCD KAFSSYQALG  120
GHKEVTGNSP QPPPEVXXXX XXXXXXXXXX XXXXXXXXXG STNTHSNRDF DLNLPALPEF  180
WLAAAAGDDE VSSPHPAKRS RFALPIKVEN HQIN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525928.15e-45zinc finger protein ZAT10
RefseqXP_009630807.14e-45PREDICTED: zinc finger protein ZAT10-like
RefseqXP_028234962.15e-45zinc finger protein ZAT10-like
SwissprotQ9SSW16e-23AZF1_ARATH; Zinc finger protein AZF1
TrEMBLQ5TJD43e-58Q5TJD4_CATRO; Zinc finger DNA-binding protein
STRINGGLYMA06G04840.12e-44(Glycine max)
STRINGXP_009630807.11e-44(Nicotiana tomentosiformis)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]