PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_20485_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HSF
Protein Properties Length: 354aa    MW: 39604.2 Da    PI: 5.5242
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_20485_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1124e-35101022103
                                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT CS
                          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks 74 
                                           F++k+y++++d++++ li w +++n+fvv+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++     
  cra_locus_20485_iso_2_len_1335_ver_3  10 FVMKTYQMVNDPSTDGLIAWGKENNNFVVIDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDR----- 77 
                                           9****************************************************************999..... PP

                                           XTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
                          HSF_DNA-bind  75 kekiweFkhksFkkgkkellekikrkkse 103
                                               w F++++F +g+++ll++i r+k++
  cra_locus_20485_iso_2_len_1335_ver_3  78 ----WAFANEWFLRGQTHLLKNIVRRKHN 102
                                           ....*********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.5E-52699IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.9E-37799IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.09E-33799IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-181033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-291099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-184860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-186173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEETSVVAPF VMKTYQMVND PSTDGLIAWG KENNNFVVID PLDFSQRILP AYFKHNNFSS  60
FVRQLNTYGF RKVDPDRWAF ANEWFLRGQT HLLKNIVRRK HNSRNNYAYH KYEDEEDDQE  120
LLMELDKLKQ EQRDLDQQLA KMNKRLEATE RRPQQMMAFL CKVVEDPEIL PRMMMEKERT  180
KRLNFGTEEK RRRLMISSVS SPPSSSGMAM TSSSVKSEEE EDAATLGAIS SSSEINFDVD  240
NFCQSSPSPE TRSGAWFSQR QKSISRPAIS QEQPYGTATA TANFYNNISS SLSPVSSIGS  300
GSFAVAPRGG NFAVYDNTYS GESGYLGGGG GGMVVGEGAA SPPPYPFSLL GGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-2319911120Heat shock factor protein 1
5d5u_B1e-2359924129Heat shock factor protein 1
5d5v_B1e-2359924129Heat shock factor protein 1
5d5v_D1e-2359924129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189193KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770587.11e-127PREDICTED: heat stress transcription factor C-1
RefseqXP_016479969.11e-127PREDICTED: heat stress transcription factor C-1-like
SwissprotQ9LV524e-92HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A068U4V71e-132A0A068U4V7_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000010251e-117(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68322333