PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2030_iso_7
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 96aa    MW: 9987.08 Da    PI: 11.0286
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2030_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-056992123
                                        EEETTTTEEESSHHHHHHHHHH.T CS
                             zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                                        ++C+ C++sF +   L++H +  H
  cra_locus_2030_iso_7_len_633_ver_3 69 HTCKSCSRSFGSENALESHKKAkH 92
                                        79*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.69E-56191No hitNo description
PfamPF139126.1E-76992IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.36996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807192IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
XKVETGKKRA ADSAIKTPVP DKKAKVATPQ KTDLKKGGVH IATPHPSKQA GKTPGNKNQQ  60
TPKSGGGSHT CKSCSRSFGS ENALESHKKA KHSGGK
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027072210.11e-41histone deacetylase HDT1-like isoform X1
RefseqXP_027072211.11e-41histone deacetylase HDT1-like isoform X2
SwissprotQ6V9I65e-31HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA0A068V4679e-41A0A068V467_COFCA; Uncharacterized protein
STRINGXP_009612087.19e-41(Nicotiana tomentosiformis)
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]