PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2030_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 144aa MW: 15609.2 Da PI: 10.6157

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2030_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.5e-05	117	140	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C++sF + L++H + H cra_locus_2030_iso_5_len_776_ver_3 117 HTCKSCSRSFGSENALESHKKAkH 140 79*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.05E-5	109	139	No hit	No description
PROSITE profile	PS50157	12.3	117	144	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.2E-6	117	140	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	119	140	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
XKVETGKKRA ADSAIKTPVP DKKAKVATPQ KTGEFPYYTX LDNFPDFYLL VRRGKVTCFX 60 ACRVLFTSFL IGLLMYLNIA DLKKGGVHIA TPHPSKQAGK TPGNKNQQTP KSGGGSHTCK 120 SCSRSFGSEN ALESHKKAKH SGGK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027072210.1	7e-33	histone deacetylase HDT1-like isoform X1
TrEMBL	A0A068V467	7e-32	A0A068V467_COFCA; Uncharacterized protein
STRING	XP_009612087.1	6e-32	(Nicotiana tomentosiformis)