PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_18478_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 274aa    MW: 31201.8 Da    PI: 9.0361
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_18478_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2232.1e-07123145123
                                           EEETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                           + C+ Cgk F+r  nL+ H+r H
  cra_locus_18478_iso_1_len_1176_ver_3 123 HYCQVCGKGFKRDANLRMHMRAH 145
                                           68*******************99 PP

2zf-C2H2110.0014209232123
                                           EEETTTT.EEESSHHHHHHHHHHT CS
                               zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                                           y+C+ C+ k Fs  s+L++H + +
  cra_locus_18478_iso_1_len_1176_ver_3 209 YVCKRCNrKKFSVLSDLRTHEKHC 232
                                           9*******************9876 PP

3zf-C2H210.70.0017241256621
                                           TTEEESSHHHHHHHHH CS
                               zf-C2H2   6 CgksFsrksnLkrHir 21 
                                           Cg++Fsrk+ L+ H +
  cra_locus_18478_iso_1_len_1176_ver_3 241 CGTTFSRKDKLMGHVS 256
                                           *************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.8E-6121148No hitNo description
SMARTSM003550.0034123145IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.653123150IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-7123175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128740.0015124143No hitNo description
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
SMARTSM0035577171204IPR015880Zinc finger, C2H2-like
SMARTSM0035522209231IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAIAIASMET LIQEIIVTSS SMMFTCQQLA LGVGSTSTGN NQGAATGELL PQQDQWYADH  60
DHSYNINTCY NTNIEAIKRD XIVVEKVEHI EEGLLLEQVH ENVSNNYDIV ELDAANLLAK  120
YTHYCQVCGK GFKRDANLRM HMRAHGDEYK SSASLINPLK KKIIILARKL YSCPQEGCRW  180
NKKHEKFQPL KSMICVKNHY KRSHCPKMYV CKRCNRKKFS VLSDLRTHEK HCGDVKWQCS  240
CGTTFSRKDK LMGHVSLFLG HSPAITSLAK MRKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027173482.11e-124protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT241e-101STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A068UFQ01e-124A0A068UFQ0_COFCA; Uncharacterized protein
STRINGXP_009601613.11e-119(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112652225