PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_17900_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 323aa    MW: 36308.2 Da    PI: 8.3205
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_17900_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.52.6e-06155174120
                                           EEETTTTEEESSHHHHHHHH CS
                               zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                           ++Cp C k+F+r  nL+ H+
  cra_locus_17900_iso_2_len_1101_ver_3 155 FSCPVCYKTFNRYNNLQMHM 174
                                           89*****************9 PP

2zf-C2H214.88.4e-05239261123
                                           EEETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                           ++C +C+k+F  k + ++H +++
  cra_locus_17900_iso_2_len_1101_ver_3 239 FVCRKCSKPFAVKGDWRTHEKNC 261
                                           89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-5155174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.09E-8155177No hitNo description
PROSITE profilePS5015710.263155182IPR007087Zinc finger, C2H2
SMARTSM003550.25155177IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
SuperFamilySSF576672.09E-8234259No hitNo description
SMARTSM0035588239259IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
XQYPPHHQYS KSLIPSPNSP PLREALPLLH NLSLKTSSCS RDQNDQLISP CINNNNAMEL  60
DDDDEKKRSK SESSSSTTDD CVTVALHIGL PRSSPTTTTS SSSSSRINSA SSRELKEQSG  120
DLVSAGGLPL NSLNYIKGQY WIPTPSQILM GPTQFSCPVC YKTFNRYNNL QMHMWGHGSQ  180
YRKGPESLRG TQPTAMLKLP CYCCAQGCKH NIDHPRAKPL KDFXNPSNNY KRKHGTKPFV  240
CRKCSKPFAV KGDWRTHEKN CGKIWYCICG SDFKHKRSLK DHIRAFGSGH GAFEIQIYEE  300
DQEEEDYESA SEVDQDRPIS PVL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023907401.11e-127zinc finger protein WIP2-like
SwissprotQ9SVY11e-109ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1U7Z1K61e-124A0A1U7Z1K6_NELNU; zinc finger protein WIP2-like
STRINGXP_010246927.11e-124(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]