PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_17900_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 278aa    MW: 31070.4 Da    PI: 7.2812
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_17900_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.1e-06155174120
                                          EEETTTTEEESSHHHHHHHH CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                          ++Cp C k+F+r  nL+ H+
  cra_locus_17900_iso_1_len_967_ver_3 155 FSCPVCYKTFNRYNNLQMHM 174
                                          89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.44E-5148177No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5155174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.263155182IPR007087Zinc finger, C2H2
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
XQYPPHHQYS KSLIPSPNSP PLREALPLLH NLSLKTSSCS RDQNDQLISP CINNNNAMEL  60
DDDDEKKRSK SESSSSTTDD CVTVALHIGL PRSSPTTTTS SSSSSRINSA SSRELKEQSG  120
DLVSAGGLPL NSLNYIKGQY WIPTPSQILM GPTQFSCPVC YKTFNRYNNL QMHMWGHGSQ  180
YRKGPESLRG TQPTAMLKLP CYCCAQGCKH NIDHPRAKPL KDFRTLQTKH KRSLKDHIRA  240
FGSGHGAFEI QIYEEDQEEE DYESASEVDQ DRPISPVL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023907401.16e-89zinc finger protein WIP2-like
SwissprotQ8W0319e-72ZWIP5_ARATH; Zinc finger protein WIP5
SwissprotQ9SVY13e-71ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A438HM343e-85A0A438HM34_VITVI; Zinc finger protein WIP2
STRINGVIT_06s0004g01870.t015e-86(Vitis vinifera)
STRINGXP_010246927.18e-86(Nelumbo nucifera)
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]