PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_17664_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 239aa    MW: 27000.3 Da    PI: 5.1558
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_17664_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS190.51.1e-587235138374
                                 GRAS 138 gppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlh 211
                                          +  +l+iT+vg     sk ++eetg+ L++fA++++++++f++ v+++l+dl+ + ++v+ +E++aV + l+l+
  cra_locus_17664_iso_1_len_727_ver_3   7 PLEMLKITAVGT----SKAMMEETGKWLSSFARTMNLTLSFKI-VVSDLKDLKQDLFEVEADETVAVYFGLRLF 75 
                                          4458********....9*************************9.7999************************** PP

                                 GRAS 212 rlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                                          ++l    + +++ ++v+ ++k+l+P  +v+ve ea++ns+ Flerf+eal y+sa+fd+ e  l+++++ r+  
  cra_locus_17664_iso_1_len_727_ver_3  76 TVL----PWPNHLEAVIGVIKHLKPCAIVMVELEANLNSPVFLERFTEALCYFSAVFDCAEGCLSHHDNCRKLT 145
                                          **9....66666777*********************************************************** PP

                                 GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgsl 358
                                          E+++l++ i+n+va e +er++r e+ + Wr    + G+ + +ls +a +qa+lll++ + +d y++ ++ ++l
  cra_locus_17664_iso_1_len_727_ver_3 146 EQVYLREMIQNMVAEEDSERTQRFESINFWRGLCARLGLMETELSPSALCQASLLLKRSAcQDFYTLVNDGKCL 219
                                          ************************************************************9999********** PP

                                 GRAS 359 vlgWkdrpLvsvSaWr 374
                                          +lgWk+ p++s+SaW+
  cra_locus_17664_iso_1_len_727_ver_3 220 ILGWKGTPILSISAWK 235
                                          ***************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.3071214IPR005202Transcription factor GRAS
PfamPF035143.8E-567235IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
ADRHSCPLEM LKITAVGTSK AMMEETGKWL SSFARTMNLT LSFKIVVSDL KDLKQDLFEV  60
EADETVAVYF GLRLFTVLPW PNHLEAVIGV IKHLKPCAIV MVELEANLNS PVFLERFTEA  120
LCYFSAVFDC AEGCLSHHDN CRKLTEQVYL REMIQNMVAE EDSERTQRFE SINFWRGLCA  180
RLGLMETELS PSALCQASLL LKRSACQDFY TLVNDGKCLI LGWKGTPILS ISAWKSSND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-231234151378Protein SCARECROW
5b3h_A2e-231234150377Protein SCARECROW
5b3h_D2e-231234150377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027067666.14e-93DELLA protein RGL2-like
RefseqXP_027072016.12e-91DELLA protein RGL2-like
TrEMBLA0A068USZ73e-89A0A068USZ7_COFCA; Uncharacterized protein
STRINGXP_008351161.11e-76(Malus domestica)
STRINGXP_008390567.11e-75(Malus domestica)
STRINGPGSC0003DMT4000562322e-77(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85001728