PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_16332_iso_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 385aa    MW: 43390.9 Da    PI: 9.1305
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_16332_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.35.2e-52141391128
                                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkr 73 
                                           lppGfrF Ptdeel+v+yL++kv+g++++l ++i evd+yk++Pw Lp+k+  +ekewyfFs+rd+ky++g+r
  cra_locus_16332_iso_4_len_1641_ver_3  14 LPPGFRFYPTDEELLVQYLCRKVAGHHFNL-QIIGEVDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSR 85 
                                           79****************************.89***************7777799****************** PP

                                   NAM  74 knratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                           +nr++ sgyWkatg+dk +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
  cra_locus_16332_iso_4_len_1641_ver_3  86 PNRVAGSGYWKATGTDKIITT-EGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139
                                           *****************9999.999****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-629149IPR003441NAC domain
PROSITE profilePS5100557.96414196IPR003441NAC domain
PfamPF023654.6E-2615139IPR003441NAC domain
SuperFamilySSF1019413.01E-62184196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MGVQETDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGHH FNLQIIGEVD LYKFDPWVLP  60
SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY  120
VGKAPKGTKT NWIMHEYRLS EPPRKNGSAR VSINFXNXIK KNEINYISIA NSIGNXFXIL  180
GNLQLDDWVL CRIYKKNSGG AAKQLSGVNS KEYSHGSSSS SSSQFDDMLE SLPEIDDRFF  240
SLPRMNSLKT LHQDQKINLQ TLGPGSIDWA TLAGLSSVPE LLPVGQNQAH QIHQAGQGNV  300
NPNDVVSGHR DMFVPSFQQM CHVDEEVQSG LRTHNRVDNS GFLQPPPQQQ QQQQHSSNLM  360
SFHQNSIDPY GIRYPTQMGN VGYRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-10212007172NAC domain-containing protein 19
3swm_B1e-10212007172NAC domain-containing protein 19
3swm_C1e-10212007172NAC domain-containing protein 19
3swm_D1e-10212007172NAC domain-containing protein 19
3swp_A1e-10212007172NAC domain-containing protein 19
3swp_B1e-10212007172NAC domain-containing protein 19
3swp_C1e-10212007172NAC domain-containing protein 19
3swp_D1e-10212007172NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063418.11e-171NAC domain-containing protein 72-like
SwissprotA0A3Q7HH641e-150JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBLA0A2U9IY230.0A0A2U9IY23_CATRO; NAC domain containing protein 055
STRINGXP_009594219.11e-161(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31222452
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]