PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15774_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family G2-like
Protein Properties Length: 308aa    MW: 33767 Da    PI: 9.4053
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15774_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.92.7e-293686151
                               G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
                                          kprlrWt +LHerFv+av++LGG++kAtPk++l++m++kgLtl+h+kSHLQ
  cra_locus_15774_iso_1_len_1488_ver_3 36 KPRLRWTADLHERFVDAVTKLGGPDKATPKSVLRVMGLKGLTLYHLKSHLQ 86
                                          79************************************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-273386IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-213687IPR006447Myb domain, plants
SuperFamilySSF466899.85E-133687IPR009057Homeodomain-like
PfamPF002494.7E-73886IPR001005SANT/Myb domain
PfamPF143791.9E-24165211IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MESMFGGGGG GMGGGCYPYE RNGNGGAAVV MTRDPKPRLR WTADLHERFV DAVTKLGGPD  60
KATPKSVLRV MGLKGLTLYH LKSHLQVPPH FCTAYPLFFY RCKIIAHLAR TFQQQKYRLG  120
QQAKKQNGAE QNKENSGDSF GQFSSQASAS SSHSTRMNIE PGEIPITEAL KSQIEVQKRL  180
QEQLEVQKKL QMRIEAQGKY LQTILEKAQK SLSVEANNGN NVEATRAELS EFNLALSSLI  240
ENVKGEERKG GNVVDSRRKI CSSSSSYYGA KDDDSNDVKL TVEGGGSINF DLNTRSSSYD  300
FIGNSGAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-173686151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-173686151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-173686151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-173686151Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027084214.11e-120myb family transcription factor PHL11-like
SwissprotC0SVS47e-74PHLB_ARATH; Myb family transcription factor PHL11
TrEMBLA0A068UVY11e-118A0A068UVY1_COFCA; Uncharacterized protein
STRINGEOY252822e-96(Theobroma cacao)
STRINGSolyc08g076010.2.14e-96(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44162139
Publications ? help Back to Top
  1. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]