PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15325_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 286aa    MW: 32210.7 Da    PI: 7.4694
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15325_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000124769123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                          y+C+ C + F++   L  H+++H
  cra_locus_15325_iso_1_len_1445_ver_3 47 YSCSFCRREFKSAQALGGHMNVH 69
                                          99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.38E-64473No hitNo description
SMARTSM003550.00844769IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1574774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEQARYWMWT KRKLDNFPSF GDSWEEQAFA EDASGHLGGC IWPPRSYSCS FCRREFKSAQ  60
ALGGHMNVHR RDRARLKQSP PIPNAPAAAS ASEVLPDQNH HMFNSCTSFA PQICTYLYNN  120
RSTNSDQGVI RVSGPPTKMD GEDYKKNNFW SNLVGDESFH VSDLKNDDKK GTSSKSWDLS  180
NGRAKSSNNN VKAADLSVSL NLLVCRKRTN NASVDDEEEE MINYQSSKRR KIDDASNSFI  240
SLFPRSSNPT ENCHSLPQYS EVLKISSSSI EDLDLELRLG DPPKVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-124269229superman protein
2l1o_A2e-124269229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027069185.11e-86zinc finger protein 10-like
TrEMBLA0A068UE833e-84A0A068UE83_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90452026