PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14938_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 266aa    MW: 29619 Da    PI: 5.8686
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14938_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.4e-144892347
                                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                         +WT+eE+ l++ + ++lG+g+W+ Iar + + Rt+ q+ s+ qky
  cra_locus_14938_iso_2_len_795_ver_3 48 PWTEEEHRLFLLGLQKLGKGDWRGIARNFVTSRTPTQVASHAQKY 92
                                         8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7094197IPR017930Myb domain
SMARTSM007174.7E-114595IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.0E-184696IPR006447Myb domain, plants
SuperFamilySSF466892.15E-164798IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-124791IPR009057Homeodomain-like
PfamPF002491.4E-114892IPR001005SANT/Myb domain
CDDcd001672.25E-104893No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
XLYESNMSNK DCSAVAEARC CTHRARHSAS LVMTGGSKTF NLFFAGVPWT EEEHRLFLLG  60
LQKLGKGDWR GIARNFVTSR TPTQVASHAQ KYFIRQSNAT RRKRRSSLFD MVPEAGDPLA  120
LPEEQQYMLP PQVVDSSKEQ LSVPHSHTGE DENEKSIPSL DLSLKRDVEP METTPSESVE  180
ETKEIVTPSP EIPPVFPSFF PAYIPVPFPI WPSNMNFQED RGAEVSRHKI LKPIPVVPKE  240
PVNVDELVGM SHLSLGDAAA GQAESX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009626737.11e-100PREDICTED: transcription factor MYB1R1
TrEMBLA0A068TPK61e-107A0A068TPK6_COFCA; Uncharacterized protein
STRINGSolyc12g044610.1.18e-98(Solanum lycopersicum)
STRINGPGSC0003DMT4000679949e-98(Solanum tuberosum)