PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14421_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 165aa    MW: 18104.2 Da    PI: 7.602
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14421_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.0001596118123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                          ++C++C + F ++  L  H++ H
  cra_locus_14421_iso_2_len_703_ver_3  96 FSCNYCRRKFYSSQALGGHQNAH 118
                                          89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.43E-694123No hitNo description
PROSITE profilePS5015711.38596123IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MKPLNTNLES EEDSEVSSQV ASNVSTQEIS PGPSKDSTTS SPCLTESIDL ERDLRPITLD  60
LTLGFNKNEG VQLQGMSEPS GEVIPHPPAS AVSRVFSCNY CRRKFYSSQA LGGHQNAHKR  120
ERTLAKRAMR MNMLSDRYAS LASLPLHGSA YRSLGVEAHA SMHQR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027099753.11e-83zinc finger protein 4-like
RefseqXP_027099754.11e-83zinc finger protein 4-like
RefseqXP_027099755.11e-83zinc finger protein 4-like
TrEMBLA0A068UAD44e-82A0A068UAD4_COFCA; Uncharacterized protein
STRINGSolyc01g005130.2.12e-75(Solanum lycopersicum)