PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1415_iso_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family FAR1
Protein Properties Length: 202aa    MW: 23094.2 Da    PI: 9.9991
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1415_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.41.6e-2048131289
                                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgk 75 
                                          fY+eYA ++GF +r+ +s+ks+r+g+i++r + C     ++++ +     +++r   + gC+a+l +k+ek g+
  cra_locus_1415_iso_4_len_1652_ver_3  48 FYDEYAGRTGFITRVLSSRKSERDGSIISRGLGCRGISDSQKSGN----GSQKRDRRKEGCTAMLLIKREKPGR 117
                                          9*********************************86666555554....588999999**************** PP

                                 FAR1  76 wevtkleleHnHel 89 
                                          w v k+  +HnH+l
  cra_locus_1415_iso_4_len_1652_ver_3 118 WIVRKFLRDHNHSL 131
                                          ************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.2E-1848132IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MNVDMTADDG SRKTEASVCG EMGLCVTDNS REPYEGMVFD SEEAARAFYD EYAGRTGFIT  60
RVLSSRKSER DGSIISRGLG CRGISDSQKS GNGSQKRDRR KEGCTAMLLI KREKPGRWIV  120
RKFLRDHNHS LLVSLPKRRP TFDEKDKRIQ ELTAELRIKK RLSAAYHEQL LTIMKDVESH  180
NEHLSTKLQT VRDNLKKLDT TR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605654.11e-106PREDICTED: protein FAR1-RELATED SEQUENCE 2-like isoform X1
SwissprotQ9SZL83e-18FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A068UVU41e-106A0A068UVU4_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000694933e-97(Solanum tuberosum)