PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1415_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family FAR1
Protein Properties Length: 201aa    MW: 22938 Da    PI: 9.8536
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1415_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.41.6e-2048131289
                                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkw 76 
                                         fY+eYA ++GF +r+ +s+ks+r+g+i++r + C     ++++ +     +++r   + gC+a+l +k+ek g+w
  cra_locus_1415_iso_2_len_744_ver_3  48 FYDEYAGRTGFITRVLSSRKSERDGSIISRGLGCRGISDSQKSGN----GSQKRDRRKEGCTAMLLIKREKPGRW 118
                                         9*********************************86666555554....588999999***************** PP

                                FAR1  77 evtkleleHnHel 89 
                                          v k+  +HnH+l
  cra_locus_1415_iso_2_len_744_ver_3 119 IVRKFLRDHNHSL 131
                                         ***********99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.1E-1848132IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MNVDMTADDG SRKTEASVCG EMGLCVTDNS REPYEGMVFD SEEAARAFYD EYAGRTGFIT  60
RVLSSRKSER DGSIISRGLG CRGISDSQKS GNGSQKRDRR KEGCTAMLLI KREKPGRWIV  120
RKFLRDHNHS LLVSLPKRRP TFDEKDKRIQ ELTAELRIKK RLSAAYHEQL LTIMKDVESH  180
NEHLSTKLQT VRDNLKKLDT T
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605654.11e-106PREDICTED: protein FAR1-RELATED SEQUENCE 2-like isoform X1
SwissprotQ9SZL83e-18FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A068UVU41e-106A0A068UVU4_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000694938e-97(Solanum tuberosum)