PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_13570_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 273aa    MW: 29585.3 Da    PI: 8.796
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_13570_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.8e-0678100223
                                          EETTTTEEESSHHHHHHHHHH.T CS
                              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                          +Cp Cg+ F  ++nL+ H+ t H
  cra_locus_13570_iso_1_len_815_ver_3  78 SCPECGEIFMKPENLQLHQATrH 100
                                          8******************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS00028077100IPR007087Zinc finger, C2H2
PROSITE profilePS501579.14177105IPR007087Zinc finger, C2H2
SuperFamilySSF563993.45E-13102271No hitNo description
Gene3DG3DSA:3.90.228.101.3E-9103254IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
XGRGLNNNGS DQPIVSSNSL ISTTTTSAGN SNYSPLISNG SFKAMPFRKF SGCYECRMVV  60
DPVLGMTRDP SLRATICSCP ECGEIFMKPE NLQLHQATRH AVSELGPEDT SKNIVEIIFQ  120
SSWMKKQTPI CKIDRILKVQ NTSKTISRFE EYRETIKSKA TKLPKKHPRC STTFICSLGL  180
NGSSNLCNSI PHCGMCSIIK NGFKATGDDA GKGILTTATS GKAHDSAVVA SEDEKRAMLV  240
CRVIAGRVKK NLEGSFEDYD SVAAASGVYS NLX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027149240.11e-141uncharacterized protein LOC113749628
TrEMBLA0A068UVV81e-137A0A068UVV8_COFCA; Uncharacterized protein
STRINGEMJ255361e-137(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107231517