PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_13469_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 203aa    MW: 23372.8 Da    PI: 8.7876
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_13469_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-055271120
                                         EEETTTTEEESSHHHHHHHH CS
                              zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                                         ++Cp C k+F+r  n++ H+
  cra_locus_13469_iso_1_len_605_ver_3 52 FSCPLCFKTFNRYNNMQMHM 71
                                         89*****************9 PP

2zf-C2H215.54.8e-05136158123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                          + C +Cgk F  + + ++H +++
  cra_locus_13469_iso_1_len_605_ver_3 136 FMCRKCGKAFAVRGDWRTHEKNC 158
                                          89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.615274IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-55271IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.665279IPR007087Zinc finger, C2H2
SuperFamilySSF576679.91E-85274No hitNo description
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
SuperFamilySSF576679.91E-8131156No hitNo description
Gene3DG3DSA:3.30.160.601.6E-5134156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549136156IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808136156IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
XXYCDRSFKY HITDQLEVAA NGILTQAPAS TLHKGQYWIP TPAQILIGPT QFSCPLCFKT  60
FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TAMLRLPCYC CAAGCRNNID HPRAKPLKDF  120
RTLQHIIKEN MXIKPFMCRK CGKAFAVRGD WRTHEKNCGK LWYCTCGSDF KHKRSLKDHI  180
KAFGNGHAAY GIDSFEEEEE EDX
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00197DAPTransfer from AT1G51220Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244736.11e-121PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-114ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1J6IJB61e-120A0A1J6IJB6_NICAT; Zinc finger protein wip2
STRINGXP_009624990.11e-120(Nicotiana tomentosiformis)
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]