PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1333_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family TCP
Protein Properties Length: 390aa    MW: 43541.5 Da    PI: 7.9029
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1333_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.11.3e-37822181100
                                  TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......... 65 
                                          a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+ l ++         
  cra_locus_1333_iso_1_len_1504_ver_3  82 ATGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKTAIDRLSQSsmdpiiitt 155
                                          589**************************************************************888888877 PP

                                  TCP  66 ........ssssa.....sec....eaesssssasnsssg......................kaaksaakskks 100
                                                  +   +     s c    ++++++++      +                      +   +++ks ++
  cra_locus_1333_iso_1_len_1504_ver_3 156 pteednidN---SnpvpgSVCqvqlQQQQQQQQP-----QhgssswnydlviggpvesnnniS---DSMKSFFP 218
                                          766664431...1333445555332222222222.....122445777777777777764431...33333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.9E-3383187IPR005333Transcription factor, TCP
PROSITE profilePS5136933.14985143IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
XAATSEKFPL SKKRFYFFLG RGLNLDFQWD NYNNYNNNQG EGYANRGATA GARSRMKRGG  60
GRAGAGGGGE IIQVQGGHII RATGRKDRHS KVYTAKGPRD RRVRLSAHTA IQFYDVQDRL  120
GYDRPSKAVD WLINKAKTAI DRLSQSSMDP IIITTPTEED NIDNSNPVPG SVCQVQLQQQ  180
QQQQQPQHGS SSWNYDLVIG GPVESNNNIS DSMKSFFPMT TSSDQNSLMN FQRISRDGIH  240
NQNNGDLGLS LQTLQQDQNL NPVVQFQANF AKNEAWNAGG EEGENRNVGF ILNSNSMPYN  300
YTQNSSSSSS AAXXXXLLRE PLQSNNINYS HLIIPSWNID QRQFPPSHHH VDIHQSSSFY  360
GVHFDSNFQI PTQIHAEEQP SSVSPTSQQI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15257RSRMKR
25967GGRAGAGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotO822771e-45TCP10_ARATH; Transcription factor TCP10
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66072234