PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_12447_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 260aa    MW: 28954.4 Da    PI: 10.5653
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_12447_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.35.9e-21138187255
                                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                           y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a+++a+ +++g
  cra_locus_12447_iso_1_len_881_ver_3 138 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFDTAEDAARAYDRAAIEFRG 187
                                          59*******.**********94....36************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.053138195IPR001471AP2/ERF domain
PfamPF008471.2E-14138187IPR001471AP2/ERF domain
SMARTSM003805.7E-40138201IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-32138195IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-23138196IPR016177DNA-binding domain
PRINTSPR003673.1E-12139150IPR001471AP2/ERF domain
CDDcd000181.24E-22139195No hitNo description
PRINTSPR003673.1E-12161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
XRSTKRFKQE QGNSFPPPPS GSSSPSPPPP PKPRLTREQE INVMVAALKN VITGGATAAA  60
MNSTTSQHFR LFPPFESATN SSSSSIDQPL NLPPPVPDAG EICQFCKIKG CLGCNFFGIG  120
PAIDDKKKKN VVKRKKKNYR GVRQRPWGKW AAEIRDPRKA ARVWLGTFDT AEDAARAYDR  180
AAIEFRGPRA KLNFAFSDYT SLDEEKQSSS SSPAMXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-24135194262ATERF1
3gcc_A2e-24135194262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016502425.11e-64PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ062e-33EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A1S4CMZ73e-63A0A1S4CMZ7_TOBAC; ethylene-responsive transcription factor ERF109-like
STRINGXP_009609381.19e-64(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]