PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_12034_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 517aa    MW: 57189 Da    PI: 8.2979
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_12034_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.91.4e-10215252441
                                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 
                                            k  rr+++NReAAr+sR+RKka++++Le+    L++ 
  cra_locus_12034_iso_2_len_2151_ver_3 215 AKTLRRLAQNREAARKSRLRKKAYVQQLETSRIRLTQL 252
                                           6889*************************866666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.6E-7210289IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.117214258IPR004827Basic-leucine zipper domain
PfamPF001701.0E-7215256IPR004827Basic-leucine zipper domain
CDDcd147085.14E-22216268No hitNo description
Gene3DG3DSA:1.20.5.1708.1E-8216256No hitNo description
SuperFamilySSF579591.21E-6216258No hitNo description
PROSITE patternPS000360219234IPR004827Basic-leucine zipper domain
PfamPF141448.8E-32297371IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MAGQRIGGTN LSGSGPSSHH RHHHNTMPYA VFRGLYPPNS FINQEGSAFD FGELEEAIVL  60
QGVKINNNDQ SKKPLYATAT AAAATTVRPA ATLEMFPSWP TRLLHTTRGS CSKSGDQEST  120
DSGSAVNTLS SSRAAEASCR LEAESPVSEK TCSIDPQGFG QRHLHQLPPL QQEQQRTEMS  180
NDGSRTDISH PPQGATAKSA ADKRRGSTSE RVLDAKTLRR LAQNREAARK SRLRKKAYVQ  240
QLETSRIRLT QLEQDLQRAR AQGYYLGGGG SPCGNISSGA AIFDMEYARW LDDDNRHMSE  300
LRTALQAHLP DGDLRVIVDG YISHYDENFR LKGTAAKSDV FHLITGMWTT PAERCFLWMG  360
GFRPSELIKM LIGQLDPLTE QQVVGIYSLQ HSSQQAEEAL SQGLEQLQQS LVETIASGAI  420
NDGMHHMAVA LGKLTNLEGF VRQADNLRQQ TLHQLRRILT VRQAARCFLV IGEYYGRLRA  480
LSSLWASRPR ETMIGEENSS CQTTTMVQSS QNQFSNF
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027106227.10.0LOW QUALITY PROTEIN: transcription factor TGA9-like
SwissprotQ93XM60.0TGA9_ARATH; Transcription factor TGA9
TrEMBLA0A068UFE70.0A0A068UFE7_COFCA; Uncharacterized protein
STRINGEOY334490.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36832340
Publications ? help Back to Top
  1. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  2. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]