PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11859_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 239aa    MW: 26143.1 Da    PI: 9.9201
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11859_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.35.8e-213584255
                                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                         +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g
  cra_locus_11859_iso_1_len_969_ver_3 35 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRG 84
                                         69*******.**********8...557*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.01E-183592No hitNo description
PfamPF008472.3E-143584IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-233593IPR016177DNA-binding domain
SMARTSM003801.0E-403598IPR001471AP2/ERF domain
PROSITE profilePS5103223.9993592IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-333592IPR001471AP2/ERF domain
PRINTSPR003674.9E-113647IPR001471AP2/ERF domain
PRINTSPR003674.9E-115874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
IKYGNGKVKK MAMKEKATKE IKYGNGKVNG VKEVHFRGVR KRPWGRYAAE IRDPGKKSRV  60
WLGTFDTAEE AARAYDAAAR EFRGPKAKTN FPLPTENQSP SQSSTVESSS DDGAATHAPV  120
ELDLTRRLGV GINPIVPDNG SRKFYFPPTM AVLPDGGSSF SSNRFVDQSP PEWRLEPPSY  180
LPKKMAVDFR NGSGRSGGGG GQSDSDSSSV VEDNNYESGN VKREGRFELD LNFPPPLEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-213593564ATERF1
3gcc_A3e-213593564ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:12654868, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027170611.15e-62LOW QUALITY PROTEIN: ethylene-responsive transcription factor 4-like
SwissprotQ404775e-61ERF4_TOBAC; Ethylene-responsive transcription factor 4
TrEMBLA0A2G9HCE22e-66A0A2G9HCE2_9LAMI; Uncharacterized protein
STRINGXP_009772525.14e-59(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Publications ? help Back to Top
  1. Ogata T, et al.
    Involvement of NtERF3 in the cell death signalling pathway mediated by SIPK/WIPK and WRKY1 in tobacco plants.
    Plant Biol (Stuttg), 2015. 17(5): p. 962-72
    [PMID:25996234]