PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11215_iso_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 358aa    MW: 40302.6 Da    PI: 8.3192
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11215_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.93.4e-1174102533
                                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
                                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                                           +++rr+++NReAAr+sR+RKka++++Le 
  cra_locus_11215_iso_3_len_2081_ver_3  74 QVQRRLAQNREAARKSRLRKKAYVQQLEA 102
                                           789************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001701.0E-774102IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.1E-776102No hitNo description
SuperFamilySSF579599.64E-776105No hitNo description
PROSITE patternPS0003607792IPR004827Basic-leucine zipper domain
PfamPF141441.0E-28161234IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
XGLCIIPKAD ARLNEKSDYP PQESLTPQID TQAAKPFTDK VKLLLFQLSK KLVRISLETY  60
ETIILNEVRX AISQVQRRLA QNREAARKSR LRKKAYVQQL EASRLKLAQL ELEIEKARHQ  120
GGCFGGAGSN IGINGPVDPA AIAAFEVEYG LWVEEQQRKT SELRNVLQSS ISDVQLHIVV  180
ENVLNHYHDL FRMKADAAKA DVFYLVSGVW RTSVERFFLW IGGFRPSELV NILMPQLEPL  240
TDQQLVDVCN LRHSCQQAED ALSQGIDKLQ QTLAQSIAVD LTGVGNYGAH MASSMDKLEA  300
LETFVNQADH LRQQTLQQMS RILTTRQAAR ALLAFGEYFQ RLRALSSLWA ARPHESTS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269|PubMed:12897257}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00157DAPTransfer from AT1G22070Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027090078.11e-176transcription factor TGA7-like
RefseqXP_027090079.11e-176transcription factor TGA7-like
SwissprotQ392341e-133TGA3_ARATH; Transcription factor TGA3
TrEMBLA0A068TY621e-176A0A068TY62_COFCA; Uncharacterized protein
STRINGXP_009588814.11e-160(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gangadharan A,Sreerekha MV,Whitehill J,Ham JH,Mackey D
    The Pseudomonas syringae pv. tomato type III effector HopM1 suppresses Arabidopsis defenses independent of suppressing salicylic acid signaling and of targeting AtMIN7.
    PLoS ONE, 2013. 8(12): p. e82032
    [PMID:24324742]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Fang H, et al.
    The Ca2+ /calmodulin2-binding transcription factor TGA3 elevates LCD expression and H2 S production to bolster Cr6+ tolerance in Arabidopsis.
    Plant J., 2017. 91(6): p. 1038-1050
    [PMID:28670772]
  5. Sarkar S, et al.
    Interaction of Arabidopsis TGA3 and WRKY53 transcription factors on Cestrum yellow leaf curling virus (CmYLCV) promoter mediates salicylic acid-dependent gene expression in planta.
    Planta, 2018. 247(1): p. 181-199
    [PMID:28913593]