PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11012_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family G2-like
Protein Properties Length: 435aa    MW: 48916.5 Da    PI: 8.3111
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11012_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.21.4e-31279333155
                               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                           k+r+rWt+eLH+rFve+v++LGG++kAtPk++l+lm+ +gLt+ hvkSHLQkYR 
  cra_locus_11012_iso_2_len_1757_ver_3 279 KTRIRWTQELHDRFVECVNRLGGADKATPKAVLKLMDWEGLTIFHVKSHLQKYRN 333
                                           68****************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.506276336IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-28277334IPR009057Homeodomain-like
SuperFamilySSF466895.55E-17277333IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-23279334IPR006447Myb domain, plants
PfamPF002492.2E-8283332IPR001005SANT/Myb domain
PfamPF143795.3E-19362409IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MDIQKISQQQ RMVQNYGFAG DYTLEFSNRF PQCFGSQQQF PDSGLCFQSP IRDDDGSQKQ  60
NIWPDNSSST MISHIGPPST AFFATERYMG LAQYDSRDNK DSSCCSQLSK NYDIQQQVPS  120
PYEQTGNVFF ADSCAPVEAT FHSKNGLQLV KEGSKSLGSP HLNSDGPYRN PFSNLSEKER  180
ILHLKNKLLG DCDIVNIRRP SVSFDGNQDG VVSFTXSSDF YLALKHLFTL IIAPNTFCRY  240
RAIGMAXHFA QLKQSGRPSA CLSLASNNSA SSGGILSNKT RIRWTQELHD RFVECVNRLG  300
GADKATPKAV LKLMDWEGLT IFHVKSHLQK YRNAKYMPDS AEGKSDKRPG TSAAPIDIKT  360
GMQLKEALQL QLDVQRRLHE QLEIQRKLQL SIEEQGRQLK MMIDQQQKTT RSLLETQTSP  420
NPTYLSTTPE TMNDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-23279336259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-23279336259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-23279336158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-23279336158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-23279336158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-23279336158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-23279336259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-23279336259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-23279336259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-23279336259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-23279336259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-23279336259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027073078.11e-154myb family transcription factor PHL5-like
TrEMBLA0A068UPE81e-150A0A068UPE8_COFCA; Uncharacterized protein
STRINGXP_009603787.11e-124(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24912458